Description

Select sequences from a large file based on name/ID

Input

Name
Description
Pattern

0 ()

1 ()

pattern (file)

pattern file (one record per line). If no pattern is given, a string can be specified within the args using '-p pattern_string'

*.{txt,tsv}

Output

Name
Description
Pattern

0 ()

0 ()

Tools

seqkit Documentation

Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.

https://github.com/shenwei356/seqkit/doi: 10.1371/journal.pone.0163962License: MIT
nf-core pipelines with this module
genomeassembly
Authors