Description

PileupCaller is a tool to create genotype calls from bam files using read-sampling methods

Input

Name
Description
Pattern

0 ()

1 ()

snpfile (file)

Eigenstrat format .snp file of the sites in the mpileup file to call genotypes on. Only alleles matching the Ref and Alt alleles of the provided snp file will be called.

sample_names_fn (file)

File containing the sample names

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

sequencetools Documentation

Tools for population genetics on sequencing data

https://github.com/stschiff/sequenceToolsLicense: MIT
Authors