Description

Sequenza-utils bam2seqz process BAM and Wiggle files to produce a seqz file

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

0 ()

0 ()

Output

Name
Description
Pattern

seqz ()

versions ()

Tools

sequenzautils Documentation

Sequenza-utils provides 3 main command line programs to transform common NGS file format - such as FASTA, BAM - to input files for the Sequenza R package. The program - bam2seqz - process a paired set of BAM/pileup files (tumour and matching normal), and GC-content genome-wide information, to extract the common positions with A and B alleles frequencies.

doi: 10.1093/annonc/mdu479License: GPL-3.0-or-later
Authors