Description

Sequenza-utils gc_wiggle computes the GC percentage across the sequences, and returns a file in the UCSC wiggle format, given a fasta file and a window size.

Input

Name
Description
Pattern

0 ()

1 ()

Output

Name
Description
Pattern

wig ()

versions ()

Tools

sequenzautils Documentation

Sequenza-utils provides 3 main command line programs to transform common NGS file format - such as FASTA, BAM - to input files for the Sequenza R package. The program -gc_wiggle- takes fasta file as an input, computes GC percentage across the sequences and returns a file in the UCSC wiggle format.

doi: 10.1093/annonc/mdu479License: GPL-3.0-or-later
Authors