Description

Calculate the relative coverage on the Gonosomes vs Autosomes from the output of samtools depth, with error bars.

Input

Name
Description
Pattern

0 ()

1 ()

sample_list_file (file)

File containing the list of samples to be processed.

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

Tools

sexdeterrmine Documentation

A python script carry out calculate the relative coverage of X and Y chromosomes, and their associated error bars, out of capture data.

https://github.com/TCLamnidis/Sex.DetERRminedoi: 10.1038/s41467-018-07483-5License: GPL v3
Authors