Description

Tool to phase rare variants onto a scaffold of common variants (output of phase_common / ligate). Require feature AVX2.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

3 ()

4 ()

5 ()

6 ()

7 ()

8 ()

output_suffix (string)

Module output format

*.{vcf,bcf,vcf.gz,bcf.gz}

Output

Name
Description
Pattern

0 ()

0 ()

Tools

shapeit5 Documentation

Fast and accurate method for estimation of haplotypes (phasing)

doi: 10.1101/2022.10.19.512867 License: MIT
Authors