Description

The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using DNA reads generated by Oxford Nanopore flow cells as input. Please note Assembler is design to focus on speed, so assembly may be considered somewhat non-deterministic as final assembly may vary across executions. See https://github.com/chanzuckerberg/shasta/issues/296.

Input

Name
Description
Pattern

0 ()

1 ()

Output

Name
Description
Pattern

assembly ()

gfa ()

results ()

versions ()

Tools

shasta Documentation

Rapidly produce accurate assembled sequence using as input DNA reads generated by Oxford Nanopore flow cells.

https://github.com/chanzuckerberg/shastadoi: 10.1038/s41587-020-0503-6License: MIT
Authors