Description

build and deploy Shiny apps for interactively mining differential abundance data

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

3 ()

0 ()

1 ()

2 ()

contrast_stats_assay (file)

contrast statistics

gene_sets (file)

Optional: GMT-format gene set files used for enrichment, referenced in the app via the shinyngs --enrichment_gene_sets argument.

*.{gmt}

enrichment_results (file)

Optional: per-contrast enrichment result tables (e.g. GSEA output), matched to contrasts in the app via the shinyngs --enrichment_filename_template argument.

Output

Name
Description
Pattern

0 ()

0 ()

Tools

shinyngs Documentation

Provides Shiny applications for various array and NGS applications. Currently very RNA-seq centric, with plans for expansion.

https://github.com/pinin4fjords/shinyngsLicense: AGPL v3
Authors