Description

Rapid haploid variant calling

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

Output

Name
Description
Pattern

tab ()

csv ()

html ()

vcf ()

bed ()

gff ()

bam ()

bai ()

log ()

aligned_fa ()

consensus_fa ()

consensus_subs_fa ()

raw_vcf ()

filt_vcf ()

vcf_gz ()

vcf_csi ()

txt ()

versions ()

Tools

snippy Documentation

Rapid bacterial SNP calling and core genome alignments

License: GPL v2
Authors