Description

Somalier can extract informative sites, evaluate relatedness, and perform quality-control on BAM/CRAM/BCF/VCF/GVCF or from jointly-called VCFs

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

sample_groups (file)

optional path to expected groups of samples such as tumor normal pairs specified as comma-separated groups per line

*.{txt,csv}

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

somalier Documentation

Somalier can extract informative sites, evaluate relatedness, and perform quality-control on BAM/CRAM/BCF/VCF/GVCF or from jointly-called VCFs

https://github.com/brentp/somalierdoi: 10.1186/s13073-020-00761-2License: MIT
Authors