Description

Classifies and predicts the origin of metagenomic samples

Input

Name
Description
Pattern

0 ()

1 ()

sources (file)

Sources TAXID count table in csv format. Default can be downloaded from https://raw.githubusercontent.com/maxibor/sourcepredict/master/data/modern_gut_microbiomes_sources.csv

*.csv

labels (file)

Labels for the sources table in csv format. Default can be downloaded from https://raw.githubusercontent.com/maxibor/sourcepredict/master/data/modern_gut_microbiomes_labels.csv

*.csv

taxa_sqlite (file)

taxa.sqlite file downloaded with ete3 toolkit

taxa.sqlite

taxa_sqlite_traverse_pkl (file)

taxa.sqlite.traverse.pkl file downloaded with ete3 toolkit

taxa.sqlite.traverse.pkl

Output

Name
Description
Pattern

0 ()

0 ()

Tools

sourcepredict Documentation

Classification and prediction of the origin of metagenomic samples.

https://github.com/maxibor/sourcepredictdoi: 10.21105/joss.01540License: GPL v3-or-later
Authors