Description

Compare many FracMinHash signatures generated by sourmash sketch.

Input

Name
Description
Pattern

0 ()

1 ()

file_list (file)

An optional file specifying a list of file paths that should be appended to the input signatures.

save_numpy_matrix (boolean)

If true, output will contain a (dis)similarity matrix numpy binary format. At least one of save_numpy_matrix or save_csv is required.

save_csv (boolean)

If true, output will contain a (dis)similarity matrix in CSV format At least one of save_numpy_matrix or save_csv is required.

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

sourmash Documentation

Compute and compare FracMinHash signatures for DNA and protein data sets.

https://github.com/sourmash-bio/sourmashdoi: 10.21105/joss.00027License: BSD-3-clause
Authors