Description

Search a metagenome sourmash signature against one or many reference databases and return the minimum set of genomes that contain the k-mers in the metagenome.

Input

Name
Description
Pattern

0 ()

1 ()

database (file)

database

save_unassigned (boolean)

If true, output will contain a file that is a sourmash signature containing the unassigned hashes from the query

save_matches_sig (boolean)

If true, output will contain a file that is a sourmash signature composed of the FracMinHash sketches that were matched in the database and that matched the query

save_prefetch (boolean)

If true, output will contain a file with all prefetch-matched signatures from the database

save_prefetch_csv (boolean)

If true, output will contain a csv file with the names of all prefetch-matched signatures

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

sourmash Documentation

Compute and compare FracMinHash signatures for DNA data sets.

https://github.com/sourmash-bio/sourmashdoi: 10.21105/joss.00027License: BSD-3-clause
Authors