Description

Assembles a small genome (bacterial, fungal, viral)

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

3 ()

0 ()

0 ()

Output

Name
Description
Pattern

scaffolds ()

contigs ()

transcripts ()

gene_clusters ()

gfa ()

warnings ()

log ()

versions ()

Tools

spades Documentation

SPAdes (St. Petersburg genome assembler) is intended for both standard isolates and single-cell MDA bacteria assemblies.

https://github.com/ablab/spadesdoi: 10.1089/cmb.2012.0021License: GPL v2
Authors