Description

mutational signature deconvolution of cancer cells

Input

Name
Description
Pattern

0 ()

1 ()

Output

Name
Description
Pattern

signatures_mutCounts_rds ()

signatures_cv_rds ()

signatures_bestConf_rds ()

signatures_nmfOut_rds ()

signatures_plot_rds ()

signatures_plot_pdf ()

versions ()

Tools

sparsesignatures Documentation

SparseSignatures is an R-based computational framework which performs de novo extraction, inference, interpretation, or deconvolution of mutational counts of a large number of patients.

https://github.com/danro9685/SparseSignatures/tree/master?tab=readme-ov-filedoi: 10.1371/journal.pcbi.1009119License: Apache-2.0

bsgenome.hsapiens.1000genomes.hs37d5 Documentation

Reference Genome Sequence (hs37d5), based on NCBI GRCh37

doi: 10.1038/s41467-022-29271-yLicense: Artistic-2.0

bsgenome.hsapiens.ucsc.hg38 Documentation

Full genomic sequences for Homo sapiens (UCSC genome hg38)

doi: 10.18129/B9.bioc.BSgenome.Hsapiens.UCSC.hg38License: Artistic-2.0
Authors