Description

Advanced sequence file format conversions

Input

Name
Description
Pattern

0 ()

1 ()

fasta (file)

Reference genome in FASTA format

*.{fa,fasta}

fai (file)

FASTA index file from samtools faidx

*.{fai}

gzi (file)

Optional gzip index file for BAM inputs

*.gzi

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

Tools

scramble Documentation

Staden Package 'io_lib' (sometimes referred to as libstaden-read by distributions). This contains code for reading and writing a variety of Bioinformatics / DNA Sequence formats.

https://github.com/jkbonfield/io_libLicense: BSD
Authors