Description

Transform segmentation mask of multiplexed or H&E stained tissue images using stainwarpy

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

fixed_img (string)

Which image to use as fixed image for registration. Options - 'hne' or 'multiplexed'

final_sz (string)

In which pixel size to output the registered image and segmentation mask. Options - 'hne' or 'multiplexed'

Output

Name
Description
Pattern

0 ()

0 ()

Tools

stainwarpy Documentation

Register H&E stained and Multiplexed tissue images using feature-based image registration

License: MIT License, Apache-2.0
Authors