Description

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

Input

Name
Description
Pattern

0 ()

1 ()

Output

Name
Description
Pattern

results_xlsx ()

summary_tsv ()

detailed_summary_tsv ()

resfinder_tsv ()

plasmidfinder_tsv ()

mlst_tsv ()

settings_txt ()

pointfinder_tsv ()

versions ()

Tools

staramr Documentation

Scan genome contigs against the ResFinder and PointFinder databases. In order to use the PointFinder databases, you will have to add --pointfinder-organism ORGANISM to the ext.args options.

doi: 10.3390/microorganisms10020292License: Apache Software License
Authors