Description

Framework that scores enhancer–gene interactions using the Activity-By-Contact model and derives transcription factor affinities on gene level

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

3 ()

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

Output

Name
Description
Pattern

affinities ()

versions ()

Tools

stare Documentation

Score enhancer–gene interactions with ABC and compute TF-gene affinity matrices

https://github.com/SchulzLab/STAREdoi: 10.1093/bioinformatics/btad062License: MIT
Authors