Description

Download STAR-fusion genome resource required to run STAR-Fusion caller

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

fusion_annot_lib (file)

Fusion annotation library file containing known fusion genes

dfam_species (string)

Dfam species name

pfam_url (file)

Gzipped Pfam-A HMM library, unpacked and indexed with hmmpress

Pfam-A.hmm.gz

dfam_urls (file)

Dfam HMM library and its four hmmpress index files (.hmm, .hmm.h3f, .hmm.h3i, .hmm.h3m, .hmm.h3p)

*.hmm{,.h3f,.h3i,.h3m,.h3p}

annot_filter_url (file)

Annotation filter rule file passed to --annot_filter_rule

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

star-fusion Documentation

Fusion calling algorithm for RNAseq data

https://github.com/STAR-Fusion/STAR-Fusiondoi: 10.1186/s13059-019-1842-9License: GPL v3
Authors