Description

STITCH is an R program for reference panel free, read aware, low coverage sequencing genotype imputation. STITCH runs on a set of samples with sequencing reads in BAM format, as well as a list of positions to genotype, and outputs imputed genotypes in VCF format.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

3 ()

0 ()

1 ()

2 ()

3 ()

4 ()

5 ()

6 ()

0 ()

1 ()

2 ()

0 ()

Output

Name
Description
Pattern

input ()

rdata ()

plots ()

vcf ()

bgen ()

versions ()

Tools

stitch Documentation

STITCH - Sequencing To Imputation Through Constructing Haplotypes

doi: 10.1038/ng.3594License: GPL v3
Authors