Description

Strelka2 is a fast and accurate small variant caller optimized for analysis of germline variation in small cohorts and somatic variation in tumor/normal sample pairs

Input

Name
Description
Pattern

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fasta (file)

Genome reference FASTA file

*.{fa,fasta}

fai (file)

Genome reference FASTA index file

*.{fa.fai,fasta.fai}

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

strelka Documentation

Strelka calls somatic and germline small variants from mapped sequencing reads