Description

Strelka2 is a fast and accurate small variant caller optimized for analysis of germline variation in small cohorts and somatic variation in tumor/normal sample pairs

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

3 ()

4 ()

5 ()

6 ()

7 ()

8 ()

fasta (file)

Genome reference FASTA file

*.{fa,fasta}

fai (file)

Genome reference FASTA index file

*.{fa.fai,fasta.fai}

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

strelka Documentation

Strelka calls somatic and germline small variants from mapped sequencing reads

https://github.com/Illumina/strelkadoi: 10.1038/s41592-018-0051-xLicense: GPL v3
Authors