Description

Compare or merge VCF files to generate a consensus or multi sample VCF files.

Input

Name
Description
Pattern

0 ()

1 ()

max_distance_breakpoints (integer)

Max distance between breakpoints (0-1 percent of length, 1- number of bp)

min_supporting_callers (integer)

Minimum number of supporting caller

account_for_type (integer)

Take the type into account (1==yes, else no)

account_for_sv_strands (integer)

Take the strands of SVs into account (1==yes, else no)

estimate_distanced_by_sv_size (integer)

Estimate distance based on the size of SV (1==yes, else no)

min_sv_size (integer)

Minimum size of SVs to be taken into account

Output

Name
Description
Pattern

0 ()

0 ()

Tools

survivor Documentation

Toolset for SV simulation, comparison and filtering

https://github.com/fritzsedlazeck/SURVIVORdoi: 10.1038/NCOMMS14061License: MIT
Authors