Description

Query a structural variant database, using a vcf file as query

Input

Name
Description
Pattern

0 ()

1 ()

in_occs (list)

A list of allele count tags

in_frqs (list)

A list of allele frequency tags

out_occs (list)

A list of allele count tags

out_frqs (list)

A list of allele frequency tags

vcf_dbs (file)

path to a database vcf, or a comma separated list of vcfs

*.{vcf,vcf.gz}

bedpe_dbs (file)

path to a SV database of the following format chrA-posA-chrB-posB-type-count-frequency, or a comma separated list of files

*.{bedpe}

Output

Name
Description
Pattern

0 ()

0 ()

Tools

svdb Documentation

structural variant database software

License: MIT
Authors