Description

Sylph query command for querying genome databases against reads/metagenomes

Input

Name
Description
Pattern

0 ()

1 ()

database (file)

Pre-sketched .syldb/.sylsp files. Raw single-end fastq/fasta are allowed and will be automatically sketched to .sylsp/.syldb.

*.{syldb,sylsp}

Output

Name
Description
Pattern

0 ()

0 ()

Tools

sylph Documentation

Sylph quickly enables querying of genomes against even low-coverage shotgun metagenomes to find nearest neighbour ANI.

https://github.com/bluenote-1577/sylphdoi: 10.1038/s41587-024-02412-yLicense: MIT
Authors