Description

Convert taxon names to TaxIds

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

taxdb (file)

Taxonomy database unpacked from ftp://ftp.ncbi.nih.gov/pub/taxonomy/taxdump.tar.gz

Output

Name
Description
Pattern

0 ()

0 ()

Tools

taxonkit Documentation

A Cross-platform and Efficient NCBI Taxonomy Toolkit

https://github.com/shenwei356/taxonkitdoi: 10.1016/j.jgg.2021.03.006License: MIT
nf-core pipelines with this module
metagenomeassembly
Authors