modules/
taxpasta_merge

Standardise and merge two or more taxonomic profiles into a single table

taxonomic profile standardise standardisation metagenomics taxonomic profiling otu tables taxon tables

https://github.com/nf-core/modules/tree/master/modules/nf-core/taxpasta/merge

Description

Standardise and merge two or more taxonomic profiles into a single table

Input

Name

Description

Pattern

`0` ()

`1` ()

`profiler` (string)

Name of the profiler used to generate the profile (mandatory)

`format` (string)

Type of output file to be generated

tsv|csv|ods|xlsx|arrow|parquet|biom

`taxonomy` (directory)

Directory containing at a minimum nodes.dmp and names.dmp files (optional)

*/

`samplesheet` (file)

A samplesheet describing the sample name and a filepath to a taxonomic abundance profile that needs to be relative from the Nextflow work directory of the executed process. The profiles must be provided even if you give a samplesheet as argument (optional)

*.{tsv,csv,ods,xlsx,arrow,parquet}