Description

Standardise the output of a wide range of taxonomic profilers

Input

Name
Description
Pattern

0 ()

1 ()

profiler (string)

Name of the profiler used to generate the profile (mandatory)

bracken|centrifuge|diamond|ganon|kaiju|kmcp|kraken2|krakenuniq|megan6|metaphlan|motus

format (string)

Type of output file to be generated

tsv|csv|ods|xlsx|arrow|parquet|biom

taxonomy (directory)

Directory containing at a minimum nodes.dmp and names.dmp files (optional)

*/

Output

Name
Description
Pattern

0 ()

0 ()

Tools

taxpasta Documentation

TAXonomic Profile Aggregation and STAndardisation

https://github.com/taxprofiler/taxpastaLicense: Apache-2.0
Authors