Description

Create fasta consensus with TOPAS toolkit with options to penalize substitutions for typical DNA damage present in ancient DNA

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

vcf_output (boolean)

Boolean value to indicate if a compressed vcf file with the consensus calls included as SNPs should be produced

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

topas Documentation

This toolkit allows the efficient manipulation of sequence data in various ways. It is organized into modules: The FASTA processing modules, the FASTQ processing modules, the GFF processing modules and the VCF processing modules.

https://github.com/subwaystation/TOPASdoi: 10.1038/s41598-017-17723-1License: CC-BY
Authors