Description

Traitar3 - predict microbial phenotypes from genomic sequences using protein families

Input

Name
Description
Pattern

0 ()

1 ()

input_type (string)

Input type specifying the format of input sequences (from_nucleotides, from_genes, or from_annotation_summary)

pfam_db (directory)

PFAM database directory created by traitar/pfamget module or downloaded from https://ftp.ebi.ac.uk/pub/databases/Pfam/

pfam_data

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

traitar Documentation

Traitar3 - the microbial trait analyzer (for Python3)

doi: 10.1128/mSystems.00101-16License: GPL-3.0
Authors