Description

TransDecoder identifies candidate coding regions within transcript sequences. It is used to build gff file. You can use this module after transdecoder_longorf

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

Output

Name
Description
Pattern

pep ()

gff3 ()

cds ()

bed ()

versions ()

Tools

transdecoder Documentation

TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks.

https://github.com/TransDecoder/TransDecoderLicense: Broad Institute
Authors