Description

Reference-free and reference-based quality assessment of de novo transcriptome assemblies. Only sequence-based (--assembly) and reference-based (--reference) metrics are supported. Read-based metrics (--left/--right) are not: they hard-require the bam-read binary, which isn't published on any conda channel, and their aligner (snap-aligner, pinned to an old dev build) segfaults building an index for at least small test genomes.

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Tools

transrate Documentation

Reference free quality assessment of de-novo transcriptome assemblies

https://github.com/blahah/transrate/doi: 10.1101/gr.196469.115License: MIT
Authors