Description

Run TRUST4 on RNA-seq data

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

fasta (file)

Path to the fasta file coordinate and sequence of V/D/J/C genes

vdj_reference (file)

reference file of V/D/J genes

barcode_whitelist (file)

BarocdeWhitelist file

cell_barcode_read (string)

Read containing cell barcode (either R1 or R2)

umi_read (string)

Read containing umi barcode (either R1 or R2)

read_format (string)

Specifies where in the read the barcodes and UMIs can be found.

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

trust4 Documentation

TCR and BCR assembly from bulk or single-cell RNA-seq data

License: GPL v3
Authors