Description

Transcript Selector for BRAKER TSEBRA combines gene predictions by selecting transcripts based on their extrisic evidence support

Input

Name
Description
Pattern

0 ()

1 ()

hints_files (list)

List of files containing extrinsic evidence in gff

*.gff

keep_gtfs (list)

List of gene prediction files in gtf. These gene sets are used the same way as other inputs, but TSEBRA ensures that all transcripts from these gene sets are included in the output

*.gtf

config (file)

Configuration file that sets the parameter for TSEBRA

*.cfg

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

Tools

tsebra Documentation

TSEBRA is a combiner tool that selects transcripts from gene predictions based on the support by extrisic evidence in form of introns and start/stop codons

doi: 10.1186/s12859-021-04482-0License: Artistic-2.0
Authors