Description

Deduplicate reads based on the mapping co-ordinate and the UMI attached to the read.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

mode (string)

Selects the mode of Umicollapse - either fastq or bam need to be provided.

{fastq,bam}

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

umicollapse Documentation

UMICollapse contains tools for dealing with Unique Molecular Identifiers (UMIs)/Random Molecular Tags (RMTs).

https://github.com/siddharthab/UMICollapsedoi: 10.7717/peerj.8275License: MIT
Authors