Description

VarScan2 is a tool for variant detection in massively parallel sequencing data. It can detect SNPs, indels, and copy number variations in both somatic and germline samples. It is particularly useful for analyzing tumor/normal sample pairs. Subtool fpfilter is used to filter a set of SNPs/indels based on coverage, reads, p-value, etc.

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Tools

varscan Documentation

variant detection in massively parallel sequencing data

https://github.com/dkoboldt/varscandoi: 10.1101/gr.129684.111License: The Non-Profit Open Software License version 3.0 (NPOSL-3.0)
Authors