Description

The align command performs pairwise sequence alignments of viral genomes and provides similarity measures like ANI and coverage (alignment fraction)

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

save_alignment (boolean)

Save the pairwise alignments to a blast-like file.

*.aln.tsv

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

vclust Documentation

Fast and accurate tool for calculating ANI and clustering virus genomes and metagenomes.

https://github.com/refresh-bio/vclustdoi: 10.1038/s41592-025-02701-7License: GPL v3-or-later
Authors