Description

Vclust cluster performs threshold-based clustering by assigning a genome sequence to a cluster if its similarity (e.g., ANI) to the cluster meets or exceeds a user-defined threshold.

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

metric (string)

Similarity metric for clustering choices: 'tani','gani' or 'ani'

tani|gani|ani

tani (float)

Min. total ANI

gani (float)

Min. global ANI

ani (float)

Min. ANI

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

Tools

vclust Documentation

"Fast and accurate tool for calculating ANI and clustering virus genomes and metagenomes."

https://github.com/refresh-bio/vclustdoi: 10.1038/s41592-025-02701-7License: GPL v3-or-later
Authors