Description

Deconstruct snarls present in a variation graph in GFA format to variants in VCF format

Input

Name
Description
Pattern

0 ()

1 ()

pb (file)

Optional snarls file (from vg snarls) to avoid recomputing. Usually ends with "pb". See "vg snarls".

*.{pb}

gbwt (file)

Optional GBWT file (from vg gbwt) so to only consider alt traversals that correspond to GBWT threads FILE.

*.{gbwt}

Output

Name
Description
Pattern

0 ()

0 ()

Tools

vg Documentation

Variation graph data structures, interchange formats, alignment, genotyping, and variant calling methods.

License: MIT
Authors