Description

Fast and memory-efficient viral consensus genome sequence generation from read alignments

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

primer_bed (file)

Optional BED file with primer coordinates for trimming

*.bed

save_pos_counts (boolean)

Save per-position counts to a TSV file

save_ins_counts (boolean)

Save insertion counts to a JSON file

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

viralconsensus Documentation

ViralConsensus is a fast and memory-efficient tool for calling viral consensus genome sequences directly from read alignment data.

https://github.com/niemasd/ViralConsensusdoi: 10.1093/bioinformatics/btad317License: GPL-3.0-or-later
Authors