Description

The module prepares the specification JSON file for Vizgen's post-processing tool cell segmentation workflow.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

algorithm_json (file)

JSON file containing the algorithm specification

*.json

images_regex (string)

Can either be blank to match files by MERSCOPE convention, or a python formatting string specifying the file name (e.g., image_{stain}z{z}.tif), or a regular expression matching the tiff files to be used (e.g., mosaic(?P[\w|-]+)_z(?P[0-9]+).tif)

Output

Name
Description
Pattern

0 ()

0 ()

Tools

vizgenpostprocessing Documentation

Vizgen's post-processing tool

https://github.com/Vizgen/vizgen-postprocessingLicense: Apache-2.0
Authors