Description

Cluster sequences using a single-pass, greedy centroid-based clustering algorithm.

Input

Name
Description
Pattern

0 ()

1 ()

Output

Name
Description
Pattern

aln ()

biom ()

mothur ()

otu ()

bam ()

out ()

blast ()

uc ()

centroids ()

clusters ()

profile ()

msa ()

versions ()

Tools

vsearch Documentation

VSEARCH is a versatile open-source tool for microbiome analysis, including chimera detection, clustering, dereplication and rereplication, extraction, FASTA/FASTQ/SFF file processing, masking, orienting, pair-wise alignment, restriction site cutting, searching, shuffling, sorting, subsampling, and taxonomic classification of amplicon sequences for metagenomics, genomics, and population genetics. (USEARCH alternative)

https://github.com/torognes/vsearchdoi: 10.7717/peerj.2584License: GPL v3-or-later OR BSD-2-clause
Authors