Description

Performs quality filtering and / or conversion of a FASTQ file to FASTA format.

Input

Name
Description
Pattern

0 ()

1 ()

Output

Name
Description
Pattern

fasta ()

log ()

versions ()

Tools

vsearch Documentation

VSEARCH is a versatile open-source tool for microbiome analysis, including chimera detection, clustering, dereplication and rereplication, extraction, FASTA/FASTQ/SFF file processing, masking, orienting, pair-wise alignment, restriction site cutting, searching, shuffling, sorting, subsampling, and taxonomic classification of amplicon sequences for metagenomics, genomics, and population genetics. (USEARCH alternative)

doi: 10.7717/peerj.2584License: GPL v3-or-later OR BSD-2-clause
Authors