Description

Compare target sequences to fasta-formatted query sequences using global pairwise alignment.

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

0 ()

0 ()

0 ()

Output

Name
Description
Pattern

aln ()

biom ()

lca ()

mothur ()

otu ()

sam ()

tsv ()

txt ()

uc ()

versions ()

Tools

vsearch Documentation

VSEARCH is a versatile open-source tool for microbiome analysis, including chimera detection, clustering, dereplication and rereplication, extraction, FASTA/FASTQ/SFF file processing, masking, orienting, pair-wise alignment, restriction site cutting, searching, shuffling, sorting, subsampling, and taxonomic classification of amplicon sequences for metagenomics, genomics, and population genetics. (USEARCH alternative)

doi: 10.7717/peerj.2584License: GPL v3-or-later OR BSD-2-clause
Authors