Description

The VueGen nf-core module is designed to automate report generation from outputs produced by other modules, subworkflows, or pipelines. The module integrates the VueGen Python library and customizes it for compatibility with the Nextflow environment. VueGen automates the creation of reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications.

Input

Name
Description
Pattern

input_type (string)

Specifies whether the input is a configuration file ('config') or a directory ('directory').

^(config|directory)$

input_path (file)

Path to the input directory or configuration file used by VueGen.

report_type (string)

The type of report to generate. Options include 'streamlit', 'html', 'pdf', 'docx', 'odt', 'revealjs', 'pptx', and 'jupyter'.

^(streamlit|html|pdf|docx|odt|revealjs|pptx|jupyter)$

Output

Name
Description
Pattern

0 ()

0 ()

Tools

vuegen Documentation

The VueGen nf-core module is designed to automate report generation from outputs produced by other modules, subworkflows, or pipelines. The module integrates the VueGen Python library and customizes it for compatibility with the Nextflow environment. VueGen automates the creation of reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications.

https://github.com/Multiomics-Analytics-Group/vuegendoi: 10.1101/2025.03.05.641152License: MIT
Authors