Description

Build a bucketed 3-way Cuckoo hash table index from host and graft reference FASTA files for xenograft read sorting.

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

nobjects (integer)

Estimated total number of k-mers to be stored in the hash table.

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

Tools

xengsort Documentation

Fast lightweight accurate xenograft sorting using 3-way bucketed Cuckoo hashing

doi: 10.4230/LIPIcs.WABI.2020.4License: MIT
Authors