modules/
xeniumranger_resegment

The xeniumranger resegment module allows you to generate a new segmentation of the morphology image space by rerunning the Xenium Onboard Analysis (XOA) segmentation algorithms with modified parameters.

spatial resegment morphology segmentation xeniumranger

https://github.com/nf-core/modules/tree/master/modules/nf-core/xeniumranger/resegment

Description

Input

Name

Description

Pattern

`0` ()

`1` ()

`0` ()

Output

Name

Description

Pattern

`outs` ()

`versions` ()

Tools

xeniumranger Documentation

Xenium Ranger is a set of analysis pipelines that process Xenium In Situ Gene Expression data to relabel, resegment, or import new segmentation results from community-developed tools. Xenium Ranger provides flexible off-instrument reanalysis of Xenium In Situ data. Relabel transcripts, resegment cells with the latest 10x segmentation algorithms, or import your own segmentation data to assign transcripts to cells.

https://www.10xgenomics.com/support/software/xenium-ranger/latest/analysisLicense: 10x Genomics EULA