Description

a tool to build k-mer hash table for fasta and fastq files

Input

Name
Description
Pattern

meta (map)

Groovy Map containing sample information e.g. [ id:'sample1' ]

reads (file)

reads fastq/cram file

*.{fastq.gz,fq.gz,fasta.gz,fa.gz,cram}

Output

Name
Description
Pattern

yak

meta (map)

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

*.yak (file)

k-mer hash table of input

*.{yak}

versions_yak

${task.process} (string)

The process the versions were collected from

yak (string)

The tool name

yak version (string)

The command used to generate the version of the tool

Topics

Name
Description
Pattern

versions

${task.process} (string)

The process the versions were collected from

yak (string)

The tool name

yak version (string)

The command used to generate the version of the tool

Tools

yak Documentation

Yet another k-mer analyzer

https://github.com/lh3/yakLicense: MIT
Pipelines with this module
genomeassembly
Authors