Available Modules
Modules are reusable process definitions for Nextflow DSL2 pipelines. These modules are maintained in the sanger-tol/nf-core-modules repository. For guidance on writing modules, see the nf-core documentation.
- hic 9
- fasta 8
- assembly 8
- align 6
- genomics 5
- cram 5
- fastq 5
- busco 4
- chunk 4
- bam 4
- genome 4
- bed 4
- pairs 4
- pretext 4
- contamination 3
- index 3
- longc 3
- tsv 3
- agp 2
- 10X 2
- fcs-gx 2
- contacts 2
- longranger 2
- curation 2
- paramsfile 2
- json 2
- juicer 2
- generateparamsfile 2
- blobtoolkit 2
- masking 2
- paf 2
- ancestral 2
- sort 2
- qc 2
- fai 2
- png 2
- summary 2
- autofilter 2
- extract 1
- pdf 1
- reference 1
- coordinates 1
- blast 1
- mkref 1
- apiscripts 1
- pairtools 1
- reads 1
- concatemer 1
- restriction-enzyme 1
- fragments 1
- plot 1
- annotate 1
- zippypretext 1
- findtelomere 1
- sequence 1
- kmer 1
- scaffolding 1
- contact map 1
- motif 1
- windows 1
- telomere 1
- long reads 1
- sam 1
- multi-tool 1
- markduplicates 1
- merge 1
- tar 1
- gif 1
- tif 1
- getlineageodbs 1
- phasing 1
- hifi 1
- compress 1
- alignment 1
- chunking 1
- bedgraph 1
- proteome 1
- transcriptome 1
- bgzip 1
- tabix 1
- filter 1
- samplesheet 1
- csv 1
- generatecsv 1
- vcf 1
- taxids 1
- dna sequence 1
- length 1
- curationpretext 1
- pacbio 1
- find 1
- blastn 1
- haplotype resolution 1
- genome assembly 1
- fastasort 1
- gnk 1
- pigz 1
- cat 1
- statistics 1
- gzip 1
- concatenate 1
- cleaning 1
- screening 1
- parsing 1
- taxonomy 1
- random access 1
- count 1
No modules found.