Repository health

Check GitHub settings for all sanger-tol Nextflow pipelines repositories

Pipelines

Pipeline Name	Released	Released after tools	Main = release	JSON Schema	DSL2	Wikis	Issues	Merge commits	Rebase merging	Squash merges	Default branch	Keywords	Description	Repo URL	Team access		Branches exist			Branch protection: main						Branch protection: dev
ascc		—	—
blobtoolkit
curationpretext
ear
ensemblgenedownload
ensemblrepeatdownload
genealignment		—	—
genomeassembly		—	—
genomenote
insdcdownload
longreadmag		—	—																	—	—	—	—	—	—
readmapping
sequencecomposition
treeval
variantcalling

Core repos

Pipeline Name	Wikis	Issues	Merge commits	Rebase merging	Squash merges	Default branch	Keywords	Description	Repo URL	Team all	Team admin	main: exists
cobiontcheck
gda
pipelines-website

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