Pipelines
| Pipeline Name | Released | Released after tools | Main = release | JSON Schema | DSL2 | Wikis | Issues | Merge commits | Rebase merging | Squash merges | Default branch | Keywords | Description | Repo URL | Team access | Branches exist | Branch protection ruleset | nf-core CI protection | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ascc | |||||||||||||||||||||
| blobtoolkit | |||||||||||||||||||||
| busco | |||||||||||||||||||||
| curationpretext | |||||||||||||||||||||
| ear | |||||||||||||||||||||
| ensemblgenedownload | |||||||||||||||||||||
| ensemblrepeatdownload | |||||||||||||||||||||
| genomeassembly | |||||||||||||||||||||
| genomenote | |||||||||||||||||||||
| insdcdownload | |||||||||||||||||||||
| metagenomeassembly | |||||||||||||||||||||
| nfmicrofinder | |||||||||||||||||||||
| purging | — | — | |||||||||||||||||||
| readmapping | |||||||||||||||||||||
| sequencecomposition | |||||||||||||||||||||
| tollongc | — | — | |||||||||||||||||||
| treeval | |||||||||||||||||||||
| variantcalling | |||||||||||||||||||||
| variantcomposition | |||||||||||||||||||||
Core repos
| Pipeline Name | Wikis | Issues | Merge commits | Rebase merging | Squash merges | Default branch | Keywords | Description | Repo URL | Branch protection ruleset | Team all | Team admin | main: exists |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| nf-core-modules | |||||||||||||
| pipelines-website |
Actions
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Warning: some core repositories, such as nf-core-modules, may use different branch-protection rulesets from pipelines. Check the repository's intended ruleset before making changes based on these checks.